NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115545_1174856

Scaffold Ga0115545_1174856


Overview

Basic Information
Taxon OID3300009433 Open in IMG/M
Scaffold IDGa0115545_1174856 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055546Metagenome / Metatranscriptome138Y
F069496Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0115545_11748561F055546N/AMANKKKQATPGTVQYNKLIAELPEKREKIKAQIEFRNNVIESQKRVNYKNEFDRLQGAKRISGLDVNAKTRMKELQNKARQSLKGEPAHRIYSTKF*
Ga0115545_11748562F069496N/AMDSYHKRKKLLEEKYGKLIKLSASSINDDGIGKNTIASHQQHKIVKQLRDISDEEGLKRAYDSQDGLYQHYNKLFIAGTKDFPQDHVDDLKLPFDDTLNKTKRGRDADAYYTSHHEIDTVIGHSLG
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