Scaffold Ga0115008

Basic Information
Taxon OID	3300009436 Open in IMG/M
Scaffold ID	Ga0115008_10000532 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009436 Open in IMG/M

Scaffold ID

Ga0115008_10000532 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28698
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (19.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28698

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (19.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030770	Metagenome / Metatranscriptome	184	Y
F032285	Metagenome / Metatranscriptome	180	Y
F045129	Metagenome / Metatranscriptome	153	Y
F049660	Metagenome / Metatranscriptome	146	Y
F061854	Metagenome / Metatranscriptome	131	Y
F095485	Metagenome / Metatranscriptome	105	Y
F103295	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_1000053213	F030770	N/A	MKNMLNTEKPKVTKPWSKEMYDWNDSVSDLMKAEIKIQIETNKNDFDKLNELVTLCGGIKFGDGFEIEDVYTECLRELENVQNYWLNEEWAWSVEQGIVTDCIKIDFVGY*
Ga0115008_1000053216	F061854	N/A	MFKKVKSKMLTYLFTDWVKNEEDVETLLLTKQLIENRKNAIVGHTPIIGFRTNHKVDGSLS*
Ga0115008_1000053230	F032285	N/A	MKWDNVHISDKIHWLKDVVMNSTNYKEGDEFIINALITGSNNTFSGEMGFDIQPHHMKFMRELWNEHIETQMDNSIITKLREKS*
Ga0115008_1000053247	F103295	N/A	MEIDKAKFKRLKKKVLTKYPKASTQRTSDGKYFVSDGVGNELMKEYMIPSQSTVTAAWFFLADVMKIHQNIERTHPKRMDLKSFEAKFARISKRNRK*
Ga0115008_1000053248	F049660	N/A	MKAYSGKPRGRVNQGGATHQKDRDRLKEFGKNYNSIDFEMGEHLTEGNYKDKSRPIGTLVVGNQRVDLTWSECNKIFTTLLDAQQVHRRKIQLGMFD*
Ga0115008_1000053249	F095485	N/A	MKASDLFRELGMGDDEMGEARNWVNYKHFSETIPIVLTLSEYVDTVYKHAVTVDAKPHQWFSERYMTERYLQSDVGIDSDYITNLENRICKILQNGKIYELHIEKFLELCLGVVKKSLLALPKEVLIFLNQIYKGKY*
Ga0115008_1000053250	F045129	N/A	MSIHYIDEPHRQRVIDILSTDDSDDTKQSKLKLYLISEPYFKHFASEPSWLTREIIKDFNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115008_10000532

Overview

Ecosystem & Geography

Associated Families

Sequences