NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115008_10077450

Scaffold Ga0115008_10077450


Overview

Basic Information
Taxon OID3300009436 Open in IMG/M
Scaffold IDGa0115008_10077450 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2509
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020898Metagenome / Metatranscriptome221Y
F038091Metagenome166N
F077379Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0115008_100774504F020898AGGAGMHNVKLKVNLNKKIANLTNSILNNTNFAMQESTKNSCKSIYKNFKFNSTTKCADGNETNFTAQMYNKYYTGRTCMLTFKNNAFVSMYTLD*
Ga0115008_100774506F038091AGGMQRITNTNTLIVVDPIMSPLFTAQLITVSSYNKLTAQTQQDISVVAYSKQAYSNAMSLSYNAQSNAYVVYNVTQNLSYSVAV*
Ga0115008_100774507F077379N/AVLHYKNNNNLAGQNMLTQKALNKKLTATLCTTTNTIFIHKNNKAHLQYTVNSSKVIHNANAQQLQAFYKLPSTLMQKTKNFNKLINTNLLKQLFTTH*
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