NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115007_10013772

Scaffold Ga0115007_10013772


Overview

Basic Information
Taxon OID3300009441 Open in IMG/M
Scaffold IDGa0115007_10013772 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4863
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014506Metagenome / Metatranscriptome262Y
F021305Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0115007_100137726F021305N/AMKKIDWKLITIGLLFGLTIWMSLNPTIKEVETIKEIEVLQTMIDSIYIEKLVEKKVFVPKYIYKTKTEIQIDTVVKEVIVEKTIVKTKTIYKDKKVVEYVDVPRPEVGKWYAGFGYQYDIENYFSGANVQLVRKFKNDKMFSLDVGFRNDRLDEITGVSKLRPYIGGTIYFRLDNKK*
Ga0115007_100137727F014506N/AEKKKKEKKFLPIQLKADIMSMQALTLDFNQVVAIGASQSSIYGDVTNTANLMIYDNLKQAGLSLGRTKVSLDKNYQVSWVDGVNVSYMRNYQMNSTSISLSRMKPMGKWGTVGVGVNYSYMFGKDALGETMPNMASLGYNVLYTNMVKINKKITYTPALIGAQNPYSYTEKTDKFNEFGTVSSDFIGILANSFTIQLTSKFSFNAGWTIIYSSNEFVPIMNSFMIGAKLPF*
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