Scaffold Ga0115007_10267758

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0115007_10267758

Scaffold Ga0115007_10267758

Overview

Basic Information
Taxon OID	3300009441 Open in IMG/M
Scaffold ID	Ga0115007_10267758 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1106
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	78.8669	Long. (^o)	-3.2286	Alt. (m)		Depth (m)	15
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F018813	Metagenome / Metatranscriptome	233	Y
F049035	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115007_102677581	F049035	N/A	MAEWNSNELQTPKEFKQIQLNAQNAINNLDILLKLVKQGADVAKLFLLLANPAGAIIKIAANEIIKLCNDFKEIGVFYLFINPNDEGYGNQTSRELGLAIKQDSLSGLYQFKPTILSRGPGGESTYTVGTAYQRSLNIADLDSNYRDSNNRQYGDSKFIPPIPIYDDPPQYELGGVDPSTWNGHAPVTTLPLADGTFPPEMKPSKVLQIMSE
Ga0115007_102677582	F005832	AGGGGG	MSKEGIWQDSEGMEDSELVEKWTNVLHTVEDAIEQLNHQKTALIKKKENIVNTEENKNG*
Ga0115007_102677583	F018813	N/A	IMSMPCSITGDMSIGHAGFSPAPITPLTVTVLVMGVPPHAAGDVIGPHVLGTSAHAGAVQDVSTTVTAGGKGLARMMDKGDCGSLILGTGATVLVGG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.