NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115007_10579557

Scaffold Ga0115007_10579557


Overview

Basic Information
Taxon OID3300009441 Open in IMG/M
Scaffold IDGa0115007_10579557 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)746
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028833Metagenome / Metatranscriptome190Y
F041248Metagenome / Metatranscriptome160Y
F072760Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0115007_105795572F028833N/AMNNLTYLWSNGMVDSIAKKVAEEPMENVDDLPQHIIDEERGDAIRQWRKEQAQMEMFDDPYLNWSGLR*
Ga0115007_105795573F041248N/AMNQQKRARQEGAIERTKASILVYEEKLKSCEDDTEKKLLKKKIERAQFTISNTKLI*
Ga0115007_105795574F072760N/AMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENRKTELESSLTH*
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