NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115557_1079878

Scaffold Ga0115557_1079878


Overview

Basic Information
Taxon OID3300009443 Open in IMG/M
Scaffold IDGa0115557_1079878 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1410
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009104Metagenome323Y
F070570Metagenome123N
F092736Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0115557_10798781F092736GAGGMENKLGLYISNLMTTIVDKEEKLFVRKLAFNELENISKDISSFLTSYISEIKPDPFQEEQNKNRNEKQTELNFGVKHENR*
Ga0115557_10798782F070570N/AMKIDNEALVELRKIRAAMDNAYDKLNKPLYEKHIAAKVSYKETIPFNLIQENFQFIVTKIKELEESVGVE*
Ga0115557_10798783F009104AGGAGMANDHAKDRYDPPGLGSDWDKDYFGDVNIGEVFRLRPDNKAKSFRKVKDGVAFDLVERIEVQLQPRDEIYVKS*
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