NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115557_1127698

Scaffold Ga0115557_1127698


Overview

Basic Information
Taxon OID3300009443 Open in IMG/M
Scaffold IDGa0115557_1127698 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F003920Metagenome / Metatranscriptome462Y
F004715Metagenome / Metatranscriptome427Y
F018084Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0115557_11276981F004715AGGAMIYTDQEHQWLSKPARSKKKRVSNQTADGSAPIEDDDRLWQRCWGMQTTIEVDGRTYVV
Ga0115557_11276982F018084N/AMKIALYVLALLIMPGVIMGMVSSYRAGQRPHRDLYLMIKKFTHRKNKR*
Ga0115557_11276983F003920N/AMLVRTVILYVAMTVCAVAFHENTFAVFELKEELQIRYMNMWELLQQLEYVDADQREVVYAEIDHIKSEIARIVNELIQHDRSQHP*
Ga0115557_11276984F003169N/AYRKNAQGLKRALYPGLTIVSLDRIITYMPYYYVLARKGSECHRYYVQLDPESADVLHDVLVSRYDLVQVCDVPYSSVELELLIAPAP*
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