NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114945_10000394

Scaffold Ga0114945_10000394


Overview

Basic Information
Taxon OID3300009444 Open in IMG/M
Scaffold IDGa0114945_10000394 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28117
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (51.72%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameBeatty, NV
CoordinatesLat. (o)36.96Long. (o)-116.72Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016953Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0114945_1000039419F016953N/AMSTGMGVDLLDEAMKIQLGVEWDRFKKAFAQAGDIGALSLDEWRIVSERDRKGLPPAVSVAALQGVLKFEKGGLRGQSFRGGEETKDPTQRLAALAQAGEVRFQDADHSELYSALAFLAGKRLGLNDTQAAVFGDAVAYLLTGWMQAHAVDARYPDKVIYEFKKTAGSAPEGGFLWSDLHSLLNRKGFKAMVDAVRLIGTGAFR*

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