Scaffold Ga0127390_1001871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127390_1001871

Scaffold Ga0127390_1001871

Overview

Basic Information
Taxon OID	3300009474 Open in IMG/M
Scaffold ID	Ga0127390_1001871 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 3m depth; DNA IDBA-UD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6923
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location Name	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011660	Metagenome	288	Y
F070039	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0127390_10018711	F070039	N/A	MYPTTNIARNTVKNAWVKDDLLLDASEDDAKTVLKMCESLGHYPNQFEVKMMFNKVMGVRNAEIGCDDCEGTGFVYTDPDFSGDYKQRFVRTCKCRAA*
Ga0127390_100187118	F011660	AGG	MTAGRSGRRQVPPQDIARYWQARASGMSIKDSAKIAGVHYNTAQGWDAKKREAKAELEIAKLDGGTVRKKVGGVQADAWAKVMDVSDLPPVIPYDRLSEEAQRGLVDFDYFRRRYLGRIPSPWQVDAAYKIEDYLLSDDKQFVVLNCPPGAGKSTLFHDIAVWQIVKNRKIRVMIGSVSQSLAKMYSRRIRETLERQFPLDPDPV

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