Scaffold Ga0114932

Basic Information
Taxon OID	3300009481 Open in IMG/M
Scaffold ID	Ga0114932_10002630 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18661
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (82.50%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

18661

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (82.50%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

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Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F013187	Metagenome	273	Y
F023748	Metagenome	209	Y
F024676	Metagenome	205	Y
F029779	Metagenome	187	Y
F054940	Metagenome	139	Y
F078603	Metagenome	116	Y
F095588	Metagenome	105	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000263011	F078603	N/A	MLYKNILNINERKNKMVRNNLDLAMLITDAILNEFEKNGKCNIPLDESKDSKPYAWDLQDVIQTELEKIAEGDNINDNTKSIGE*
Ga0114932_1000263017	F105336	GGAG	MKLRQHQITRVEQILSDLERKVEEMEQQDYITYDLGKDLENILFMLDKIREEIENE*
Ga0114932_1000263020	F013187	AGGAG	MSKKKPTWVYIYGDECQDIWEHFGFPFPNPNDRMKLKFVKYETKENKDG*
Ga0114932_1000263022	F029779	AGGAG	MMSDKEKYEELCEALVGIDATERYTHEDILSYVYNLKDTEEKFYDNKK*
Ga0114932_1000263023	F008925	AGGAG	MTTKSKPTIDAVTLNLVNKLKQIDDTMNEGAWEYIHLGDILRLQDAFHKAIRHYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE*
Ga0114932_1000263025	F023748	GAGG	MMMSEYKYTYKFSEQTVDTRYYKVESNTKLTKSEMQDLAWSVEQTEGETFKCNEGKATFEGTEIGDDAQYKMEEGEEDLADD*
Ga0114932_1000263027	F095588	GAG	MKYKIEMEIDFNKRPTKKDVLNKLFDMLRDNKVEYKLHKYNNNLWEQIKRSIKNDKHK*
Ga0114932_1000263028	F024676	AGG	MENVMYNKTNVKKQMFVIAMPYPKNKKLPDILEEEDGQVMYFKKEKDAITFLQNLYDERNIHIQALIDDNIKIMRVQ*
Ga0114932_1000263031	F054940	GAG	MNLLEQEIKELIKERYYEYLEEGYESFEAMELAKRDIYETKEVEIHTYNKIYDSSFEVD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114932_10002630

Overview

Ecosystem & Geography

Associated Families

Sequences