NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114932_10005700

Scaffold Ga0114932_10005700


Overview

Basic Information
Taxon OID3300009481 Open in IMG/M
Scaffold IDGa0114932_10005700 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10936
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F004990Metagenome416Y
F005431Metagenome / Metatranscriptome401Y
F006892Metagenome362Y
F008915Metagenome / Metatranscriptome326Y
F011253Metagenome293Y
F015660Metagenome253N
F046315Metagenome151Y
F059875Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0114932_1000570010F011253AGGTGGMKDRKLELNNIIKNIAKNKSLPYANAITKIKKDRKGYFQAKDIKQKKQSLSTDRFQQYLKTIQEEENDT*
Ga0114932_1000570016F015660N/AMPNKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRGKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLAPKVYGKNDNLRVSGDKDSPLIVKWNG*
Ga0114932_1000570017F005431AGGAMMDFDDEQKGYSAVIYIMESTNSVVVHFGGFNNISECRYFSTHIMEDFGIEQLLNVPQGVTVH*
Ga0114932_100057002F006892GGAGGMSDTGIIIPLKERIRDLETINLAHQKKNGQLRQEIQDKDKLIKELQEKLNNPLNKMREQGKI*
Ga0114932_100057004F046315N/AMNNSLNKKLIEYSANSGYNSNYIESYMTKNNLLPKEFRFRRSALDLLLKESNKKISDFIKDTYSPKEQKNKFAQISKILNPKKNAPKYFTENDLANDLAHWFNTFLNLDEVVSANYFVGDTVQIDCIGELFGNGQIGIHKIKDRHKINIHPKYASFQAVECLFEGKRGAMMLFKPSKTIDRNANNRSVICQDKKTKVVWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQISWCAEVKAAYYPTIYNT*
Ga0114932_100057005F059875N/AMKAIVLIFGVITNNGQIDLIKVPNSELKNLNSCEKAIETIAKWQLNPKSKPGNYEVWGFYTYKNRPIMLQYCTENGVYSG*
Ga0114932_100057006F008915N/AMGFIVDNIVSLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN*
Ga0114932_100057008F004990AGCAGMEFDMYGDPKKKCCGCENGADLKEGNKYYCCDHYALYVLRKPMSQIEKELNNFKE*
Ga0114932_100057009F001839N/AMKYFEKVDKDLINNRALNSNEKLIYVICKSFENAPRGCRISHKYLMQRTGIKTKKTLIKCLDNLALFGLMARKQIGQGTCHYVFDKKTMQEYIRHNINKRKKISLRKNRQFKSYMNNLNDPQVIHINKFIKE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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