Scaffold Ga0114932_10091197

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114932_10091197

Scaffold Ga0114932_10091197

Overview

Basic Information
Taxon OID	3300009481 Open in IMG/M
Scaffold ID	Ga0114932_10091197 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1903
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)		Depth (m)	470
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_100911972	F037175	GAGG	MGLTFHTNHTNKRFVRRVVENTLINLKEYPYEFLEEWDIHIWPLSETNTQFFEHITTTSGQKINPNMPSGVTGLYRMDLYLHDSSNAFKERENSDRIMHEICHARLIGTPHFVSGVHQNLNKRFTTTFWYWNRFKYTKFTLSIIDIRKFL*
Ga0114932_100911974	F049294	GGA	MANNLRYYALGAYTGLVALFTALDKISFDDPTTAIALLAPIAIVIGADYAKHKND*

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