NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127412_10012609

Scaffold Ga0127412_10012609


Overview

Basic Information
Taxon OID3300009492 Open in IMG/M
Scaffold IDGa0127412_10012609 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameUS Atlantic Margin
CoordinatesLat. (o)37.5409Long. (o)-74.10211667Alt. (m)Depth (m).06 to .08
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064490Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0127412_100126092F064490N/AGVEFGAFNGPISFSNSSGATARQCVMAIRCKNTFKGIPNRTTVRITDIECLSDATNCRIEVWRLPSNSNITGGSWVSADDDSAVEYNVGITTNFTTTGGDLRQASLIAANNPSGQQASASVAFNPTTARRSYIAQNIDSDDSNIFAVIVRNLDTNTTTDVWNTIQWRETR*
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