Scaffold Ga0127412_10020772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127412_10020772

Scaffold Ga0127412_10020772

Overview

Basic Information
Taxon OID	3300009492 Open in IMG/M
Scaffold ID	Ga0127412_10020772 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	699
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	US Atlantic Margin
Coordinates	Lat. (^o)	37.5409	Long. (^o)	-74.10211667	Alt. (m)		Depth (m)	.06 to .08
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008128	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127412_100207721	F008128	GGA	MNPVAVPKLTVSFAVDLEVEYNSFGGKTAEEIAEALQDELDDLLFEVSPHVQGVFTSITSVGFND*

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