NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115571_1000185

Scaffold Ga0115571_1000185


Overview

Basic Information
Taxon OID3300009495 Open in IMG/M
Scaffold IDGa0115571_1000185 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46663
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (82.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002688Metagenome / Metatranscriptome536Y
F024091Metagenome / Metatranscriptome207Y
F038865Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0115571_100018516F038865GAGGMAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNKKEIFLVDNAYLPQVTDSFRKKMRSK*
Ga0115571_100018526F002688GGAGMSNPNEAGDTKGAILAFLIIALTMVAIPVIIGTSMGWFNLFGILGL*
Ga0115571_100018527F024091AGGCGGMNKQQAAIKGYMDQLQTLMESGPRAHLEENSNVHYLLSCAGLYFAQMNDEDRDYYQAVQTAIEDESEWSV*
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