Basic Information | |
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Taxon OID | 3300009495 Open in IMG/M |
Scaffold ID | Ga0115571_1000185 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 46663 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (82.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002688 | Metagenome / Metatranscriptome | 536 | Y |
F024091 | Metagenome / Metatranscriptome | 207 | Y |
F038865 | Metagenome / Metatranscriptome | 165 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115571_100018516 | F038865 | GAGG | MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNKKEIFLVDNAYLPQVTDSFRKKMRSK* |
Ga0115571_100018526 | F002688 | GGAG | MSNPNEAGDTKGAILAFLIIALTMVAIPVIIGTSMGWFNLFGILGL* |
Ga0115571_100018527 | F024091 | AGGCGG | MNKQQAAIKGYMDQLQTLMESGPRAHLEENSNVHYLLSCAGLYFAQMNDEDRDYYQAVQTAIEDESEWSV* |
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