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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009495 Open in IMG/M |
| Scaffold ID | Ga0115571_1000951 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21105 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (81.48%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042905 | Metagenome / Metatranscriptome | 157 | N |
| F042906 | Metagenome / Metatranscriptome | 157 | Y |
| F052547 | Metagenome / Metatranscriptome | 142 | N |
| F080057 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115571_10009512 | F042905 | N/A | MCPGCFIPRKNLTKADNLETLYNLLIKGAYYPDEITVGPTDIFDAENFSDIMNHPYMEKLYGISAIGFTSTLTQPYAMVKDKLAKIWSLYKNIHRVPDIDFKIVLDIDKYLDGDNDHFYKNLELFKLGSVQFRVNYHKDIFKRISYNELAQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFRREMVEQKIDKQWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLGSCVALKEYMYASN* |
| Ga0115571_10009513 | F042906 | AGGAG | MPLIKNNLHYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDEHQLENAKRFIRDITDQGILVDEMLIGPTDFLASENFYEVMPHLLDIINDNSPILAFVSTLIDGDIKRFCQYITDNVNLDTEIEIGIATNPHKFFNEDYIEHVSEILNYIDKNLKHEVTYTFVVNIKDYGLDYEALHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVDNFNSVNVMVEQQIESAKGTECEDCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYTVEKDKQGYRKKFLVTEDDDPELKRIEDISYVKQ* |
| Ga0115571_10009514 | F080057 | GAGG | MLNNDWKDIVSGGGVGEEFTSIDSMKQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPRSITTFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQKLADAILMMPEDNRNIQHNCSILGSLSEKDIESKIKSIENSPLGKVVEAWDVQIALDLNRLMNDPEYLNALDERIETFKNSSLNFEISMATNIVQGVEDILYPAIDFVRSKYETVIEVLPSVVRSFNHSAKHGNKLFEWNDMLSRLAVDPHRFKNKFHFLQGDVSHKAFHYSVVSIYHGDMYLSPFIYENAQIHTDDFKVDDSWHWLPDADISDYILKKKDEVVVSQMEKSGDKECGSCKYLNICVNRMVPMIMDTVFDGRKECILNKDVIALFDDEVYHGNSY* |
| Ga0115571_10009515 | F052547 | GAGG | MGIVTNNRRSAQADKDFNLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNDNGYRVSTINIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISTEVIDLLNSIPKIDGFMYDANIALQPPVDWDWVEERLSLLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSKLVEDRFDSILTLNPSFFRAPKSKVHAHLIEKWKSYDFADDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFQVKDENDIESWTEAKSFQFMEQLTYSSETKNCGSCPNMMTCIDKGVLSYMKHHQLTLCTFPGVIAT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |