NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115569_10413212

Scaffold Ga0115569_10413212


Overview

Basic Information
Taxon OID3300009497 Open in IMG/M
Scaffold IDGa0115569_10413212 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)581
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024567Metagenome / Metatranscriptome205N
F031509Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0115569_104132121F031509GGAGMDKVDINYIVKVMWPGHCRNRSLKVLEERADIVETMNGHRKKIENFCQASCTEAFNVSNEHDMEGFNIGFKSGQDVYNFILEQATIGYEVDREIGRFNIFSQKYIKHTIRYTPKGIVID*
Ga0115569_104132122F024567N/AAIGLTNKTVMLVGYKISDPKVLKDLRSVILLHPNIKFYFLCNPPKTKQLDFCANAECVLFKDMEQLKDG*

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