Scaffold Ga0114930_10049223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114930_10049223

Scaffold Ga0114930_10049223

Overview

Basic Information
Taxon OID	3300009499 Open in IMG/M
Scaffold ID	Ga0114930_10049223 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2592
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Denmark: Anholt
Coordinates	Lat. (^o)	56.62	Long. (^o)	11.67	Alt. (m)		Depth (m)	31
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102488	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114930_100492231	F102488	GGA	MLEKLEKSPEIAIIATEEVFKTYELICLDKLKEIGRSTARDWSFAMGYNHRSSLAKIIRRIKERYPEKLKIYEDRYPRLYEAM*

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