Basic Information | |
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Taxon OID | 3300009500 Open in IMG/M |
Scaffold ID | Ga0116229_10891878 Open in IMG/M |
Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 718 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001194 | Metagenome / Metatranscriptome | 750 | Y |
F066511 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116229_108918781 | F066511 | N/A | MPGPNDTSVISLGLFSEPKRAQARVAQAQALSLNPATADRKRNGNVYWIDIDLKATDAMLNPADLQGEAGRIVRLEVKGCPSATAASR* |
Ga0116229_108918782 | F001194 | N/A | VKARTNLLRVAGGVGAFVGYGCLIAFLWLVSIQVYRWFRDGEWTHIGLSDGMRDVLVRCCVKDADSGRLADFVQWLDSPVDWLGLHRVFEVMPASLALFLVSIAGNCLFIYSRDRLHQESPSRAS* |
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