NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114951_10016231

Scaffold Ga0114951_10016231


Overview

Basic Information
Taxon OID3300009502 Open in IMG/M
Scaffold IDGa0114951_10016231 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5290
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.2Long. (o)25.1Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F030333Metagenome185Y
F034448Metagenome174Y
F040990Metagenome160Y
F100256Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0114951_100162312F030333N/AMIDRNPILTIPVKTYTHYTECEPWCLANIGEWNIAWWKDFPDIAMSVVVEGPHEDCYWFANERDALMFRLRFV*
Ga0114951_100162313F034448N/AMHVNNYTLPRPPEQALNQCHAVYINDPAFRMWAMKKYCRENNLSLIWSELVDTSDVSAFFDEACAFYFIDPADATLFTLKFK*
Ga0114951_100162314F015302N/AMMSRDEYYENTAARLDTIIGGDTQHFLRLQRVKNEYDDLARDVPIGQGFLTFYDYVKEYYGVKLQFDGDNVSLAYEVIDEKKYIMFVLKFNR*
Ga0114951_100162315F040990N/AMDMNYYYEIDPGYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSSKVWLENANGVYMIKPTWDARRHRVDRHEFTMVKLRAKTIKWWHDEPG*
Ga0114951_100162318F100256GAGMIRVSTADPTFNRAYNNAHCALPVERLEMPRQYGQRWREAYRCRSDGLDEFPHRYYTFDRDEDYTWFMLRWG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.