Scaffold Ga0123519_10204560

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123519_10204560

Scaffold Ga0123519_10204560

Overview

Basic Information
Taxon OID	3300009503 Open in IMG/M
Scaffold ID	Ga0123519_10204560 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park - Yellowstone National Park OP-RAMG-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1366
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.61	Long. (^o)	-110.44	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090961	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123519_102045602	F090961	AGGAGG	MDEKITLWMKLTKSPKCIDKEKDLWIFYCSHCHRWYKGTRHGYTSAFIGQMYFECDKGHKIEAPGWWK*

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