NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123519_10259134

Scaffold Ga0123519_10259134


Overview

Basic Information
Taxon OID3300009503 Open in IMG/M
Scaffold IDGa0123519_10259134 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park - Yellowstone National Park OP-RAMG-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1125
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.61Long. (o)-110.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074155Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0123519_102591342F074155GGAGGVAANLLSFDFIRGRLSPEQLEEFAVSLGVRLECGGNLVVRDCEVVCNICGLVWTVENTADHVPFPEYEEAGNGEGSRFEGHWQPGNTLAFLKGLGDQALANGKGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRRFLSRISLLLTRMGQRENWLLADYAGNLARKIVAFKILTKQPVSYKLGDAIIAHTIEKFSLKTGPPNLKVENEDLQLIQQLENATQKPKRPKPTYQASPLINSN*

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