Basic Information | |
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Taxon OID | 3300009504 Open in IMG/M |
Scaffold ID | Ga0114946_10025602 Open in IMG/M |
Source Dataset Name | Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3499 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Hawthorne, Nevada | |||||||
Coordinates | Lat. (o) | 38.7 | Long. (o) | -118.7 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F076231 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114946_100256025 | F076231 | GAGG | MMHLKTNKSGAANISEFSGFISAKENKIISLTKIVVMISIILAVLMIVSR* |
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