Scaffold Ga0114946_10244485

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114946_10244485

Scaffold Ga0114946_10244485

Overview

Basic Information
Taxon OID	3300009504 Open in IMG/M
Scaffold ID	Ga0114946_10244485 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	958
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Hawthorne, Nevada
Coordinates	Lat. (^o)	38.7	Long. (^o)	-118.7	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012773	Metagenome / Metatranscriptome	277	Y
F093836	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114946_102444851	F093836	N/A	GMVSRTEDLLRNWAWWLAGYVGPPVQDKAASAEGNYVSDEIWDGHDPKYEPDQLAGERVEEIVRNLPNFSRIVLKAAYVQYPYHLEHSIAQRLKISTDRYKSELKKAHELVAKSLKVD*
Ga0114946_102444852	F012773	GGA	MKQDGVTVMIGLLGPGKKMGKESESLLEDDMSECPLATEDEIVNKGNKQKAILTANYGPKEDERMCGNCEYGEKLKGCGLGKNEVFCQIFEFKCAKDNVCDAWSSEDEEED*

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