NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118657_10112776

Scaffold Ga0118657_10112776


Overview

Basic Information
Taxon OID3300009506 Open in IMG/M
Scaffold IDGa0118657_10112776 Open in IMG/M
Source Dataset NameMangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNovogene
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3965
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location NameMai Po Nature Reserve Marshes in Hong Kong
CoordinatesLat. (o)22.498889Long. (o)114.045833Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039643Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0118657_101127761F039643AGGAGMRTFWKKQVEDLGGDPSVLLKGRAQVAKEMVMALVAAQKEAITVRNAGYVIGRAACIVKNPCVDFWQGVKDGFNN*

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