Scaffold Ga0118657_10385898

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118657_10385898

Scaffold Ga0118657_10385898

Overview

Basic Information
Taxon OID	3300009506 Open in IMG/M
Scaffold ID	Ga0118657_10385898 Open in IMG/M
Source Dataset Name	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Novogene
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1847
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location Name	Mai Po Nature Reserve Marshes in Hong Kong
Coordinates	Lat. (^o)	22.498889	Long. (^o)	114.045833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040632	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118657_103858981	F040632	N/A	KSPDDASTFATGTVDELREPVAIPDQAHVVVATREEGFLWSVFDGFSELPTVRVTGCSTLPQTRQICAADPPGFLVIDMTLLEHEPMGLITLANLSDCQTHIVGITDHPVFEIGARFGRARLTFLQKPVSPHDLILLLRLQLGEANTAHADVC*

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