NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115572_10011065

Scaffold Ga0115572_10011065


Overview

Basic Information
Taxon OID3300009507 Open in IMG/M
Scaffold IDGa0115572_10011065 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6602
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Filimonas → unclassified Filimonas → Filimonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023454Metagenome / Metatranscriptome210Y
F061281Metagenome / Metatranscriptome132N
F105900Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0115572_1001106516F023454N/AMNARDIDILVDQGFWIQVSPLANAGSGWICGVYKRGKKTGNWITEASKQFDHPYDCYNWAYEFINELKIVG*
Ga0115572_100110653F105900N/AMGRVNNAFAYDKKRSKRMGKLYNTIDFNVNEKISADLFAKVPEKPVVGELEIGGKSFKVTYQELDAMMSTLQEAKRAVESKYRMGLMNK*
Ga0115572_100110655F061281N/AMNKFKKRVLKQFPNACVESAANGLRIVNNDQVLAEEFYMPDTHCEDTAWEYASMACKLTQNFNRAHPLRMDLSDVENKLARINRRKRNGRRVK*
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