NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115572_10207950

Scaffold Ga0115572_10207950


Overview

Basic Information
Taxon OID3300009507 Open in IMG/M
Scaffold IDGa0115572_10207950 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057434Metagenome136N
F061908Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0115572_102079502F057434N/AMLHLIYTRNNYDMDSVGGHFESHITLIRNVPYSHLSRLLVNKNDPELLKECDTKYFEYQESKGITDTCFHSEISIVDDEDYFKTYKDVYPDSYTISPGLIPAREDYFYDYGQKVNFMLIHDYDPNYTWFGKDWTQQMIDAEYKKRELDNQARV*
Ga0115572_102079503F061908GGAGMNNRQIRLYNSMTKNEQKMFDHLVIVKNRKPDDVFFFLHSTFNPSRDDFKKPSFANLSTEQVIRTCQQLQLKDAA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.