Basic Information | |
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Taxon OID | 3300009511 Open in IMG/M |
Scaffold ID | Ga0129277_1018092 Open in IMG/M |
Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; RNA IDBA-UD |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 592 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
Source Dataset Sampling Location | ||||||||
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Location Name | Falmouth, Massachusetts | |||||||
Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | .5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002650 | Metatranscriptome | 539 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129277_10180921 | F002650 | N/A | QPCRQHCCKLFAHITILTAMQFFRGLVFAALVCGASAASFRTAPDVSAQVARETQENIQIHDVFQSQEAKDDQTVAEVHSNHDLSQIQFRGGNWVVALDRDLKTKMLVEVSPRTALLEGIKDPCAEISCGSLTCPAGFSSTKVDGHCCPYCVNPDVKVESAITGATGSNGGTASTFCPKVWCFPTMCTKAVTAPTT |
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