NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116128_1020035

Scaffold Ga0116128_1020035


Overview

Basic Information
Taxon OID3300009518 Open in IMG/M
Scaffold IDGa0116128_1020035 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2281
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021579Metagenome / Metatranscriptome218Y
F076423Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0116128_10200351F021579GGAGGMQKAHLYEAILLVNRGIDEAVRGLERLKRAKDSGLKPGYFDEKLTLFEMHRALLNGYFCNNVQNSENRDDARFDRLHREYEKKALDEVQVYRDVQVIEERRRLEGRSPKVRFLSSEEQRAWEGLYSNLPGNVASDVERREGEQR*
Ga0116128_10200353F076423AGGAGMAKRKALATQKTRLRSAGRRYAGVQGKVVEYISHSIDDGTLCVNVCFKDKTLFSLRFACDMSIVSADISDWKTGDYEMIREYMKPIPR*
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