NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116108_1001047

Scaffold Ga0116108_1001047


Overview

Basic Information
Taxon OID3300009519 Open in IMG/M
Scaffold IDGa0116108_1001047 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14863
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032938Metagenome / Metatranscriptome178Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0116108_100104711F032938AGGAGMQKFLVVSYDDDQQQWFWDYVAAKRAEDAVAHVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNSDTATAKE*
Ga0116108_10010477F036810N/ALARATAKCRAVQLSIERRSFERKLETIVRAANAHHSCGQSPGTAQFKLLRECADDLCSHFAQSWDISPELLEAQIPAITKLKSLADPPTKPEPLALVSLGVAGAVALFFLMGVLAGLASVGYHLIGGR*
Ga0116108_10010478F070426GGAGGMILELIVAAEASALSASWIRRSRMRRQEILMSGSTSEINLPFLDQYLRQQTANPTKLQTFAAQKLAAVCRRAVHTGAFELLVLKLIQSASRRYRRESEISKVEVIL*
Ga0116108_10010479F045709GGAGGVNLTPSQKGSFLAGVGLWVLIWASVWKADDIAEAMRIQRWFNATRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLEKLLRQKGTASATLQ*
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