NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116222_1020108

Scaffold Ga0116222_1020108


Overview

Basic Information
Taxon OID3300009521 Open in IMG/M
Scaffold IDGa0116222_1020108 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3031
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092420Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0116222_10201081F092420N/ARRLSTTRPRIVFRARLNAPMCHEQVGVQVRPPEGSPEGRSAGRRPAPFEEERAMDRFEEGWEYDAELDSWLESDADPEELYLSLISDEERHRYWSESVWAHDLVDEVPPDALLFADRCAEGELSREIRLSELWGLCQDRPCTMEEFLELATLITEVGGIPGLLCVDCAMLDRPNVSANWSLATTTLCRGHLRFRLGHAQIDGGSTHRSV*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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