NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116218_1035105

Scaffold Ga0116218_1035105


Overview

Basic Information
Taxon OID3300009522 Open in IMG/M
Scaffold IDGa0116218_1035105 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2259
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0116218_10351052F036810N/AVVGRYKAVQLSIERRSFERRLESIVRAALAHQSGGLPTGNRQYKLLTTQADSICADFTGRWNVNPELLDAQIPAIRKLKSLADPPPKPKPAVLVSLGIAAAMALFFLMGILAGLTSVGYHLIGGH*
Ga0116218_10351053F070426GGAGGMILELILATEASVLSASWIRRSRRRRQEILMGGSTPETNLPFLDQYLRQQTTNPTRLQTFAAQKLAAICRHAVHTQAFELLVLKLIQSASRRSRQESEISKVEVIL*
Ga0116218_10351055F014894AGGAGGMRMSIGIPGFSIYFEHHQVKPFIKDQSKKAMDLFHERVVPAVLQGTCKALEVVANNTADAHDYLIAKLKTKQSS*
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