NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116218_1210827

Scaffold Ga0116218_1210827


Overview

Basic Information
Taxon OID3300009522 Open in IMG/M
Scaffold IDGa0116218_1210827 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)876
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F013723Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0116218_12108271F013723N/ALFIIAGPVGVGKTTFYEAYLKEPFPTLVPALRHQQQPFLDERRSFAVEDIRVDTQLLDQAKAAGYSTKVLFISTEDANLNVGRVLVRMS
Ga0116218_12108272F000321GGAMGELSTSINDALLAVDLNTVELVTLQSRQKQTGRETQVVILNRLRKRIHDVAKKRNCSMNQLVNSALLVFYSKGGESKVKKPAKGRGSSVHSYDTMSEAEHRELHQMLAELSAMQSVPFEAEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLETGFEPARGKGPRKIAHEEITT*
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