Scaffold Ga0114942_1132998

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114942_1132998

Scaffold Ga0114942_1132998

Overview

Basic Information
Taxon OID	3300009527 Open in IMG/M
Scaffold ID	Ga0114942_1132998 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	853
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Lower Cold Creek, Nevada
Coordinates	Lat. (^o)	36.42	Long. (^o)	-115.74	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001844	Metagenome / Metatranscriptome	627	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114942_11329981	F001844	N/A	RLSDPLSSAQHASRWIGDLPVGDVLAIQKEALDLVGAFPGPRRDVGAAQVEALLRIDARLEPVIAEITRQYIANDPKSSTVESRLWHGVFDLVKAFIGAYQAALKAGYPRAENRRWRAVLPWVLVRLAHHRGLDGKFRLFRYSHWIPAQWRDVHELYEFARMRGWQREQLVFGGGAFRRPGITLEQEYLQTLLLMRLDSGNFTPDQVEWVARQLADWTPSVSLTPPPGEGAGFVVDLSGSQGLKRRERPGAGGRLLYADLTPIYTRVVERMRWLPEQDEATPI

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