Scaffold Ga0114942_1271815

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114942_1271815

Scaffold Ga0114942_1271815

Overview

Basic Information
Taxon OID	3300009527 Open in IMG/M
Scaffold ID	Ga0114942_1271815 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	640
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Lower Cold Creek, Nevada
Coordinates	Lat. (^o)	36.42	Long. (^o)	-115.74	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075268	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114942_12718152	F075268	N/A	MTAAEVPEHDHEIKIKGGSFELSDLGHLMPGMAEIMPLVGGRIWKCYYAGKAKNRALAAFQLSEAVNLLEKGAILRPKYGDDMEVFLSGIVATLRTAIQDEDWDTFESAFDTMIEDANGYHEQYDKGFLRWKMP

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