Scaffold Ga0129360_1001647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129360_1001647

Scaffold Ga0129360_1001647

Overview

Basic Information
Taxon OID	3300009532 Open in IMG/M
Scaffold ID	Ga0129360_1001647 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, Depth 3m; RNA IDBA-UD
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1206
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Prorocentrales → Prorocentraceae → Prorocentrum → Prorocentrum minimum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location Name	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039462	Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129360_10016471	F039462	N/A	ATTADYRSRSRGVEQPEEFLLPVKGRVQRGRSPDDDCYSLGCCNVAGLNCFETKPEKGKCLKNCTPSASQLCVQTQPIMDPILKDADWYGPSLYCFAVVMQDIGSTKKMYDLELLQGAYGRKTSIFGCENWGVFSDKEGEVGPGAPLVKLEDADGDFHFAKREETGTWLNTGLHYQAWKAIGEAGVYKSASWVVKVDPDAVFVPSRLVSYLSSKVVPANGLYLENCKGVKYGWFGSLEIFSAVAFETLLGSMAACKGGTVDWKTGVDGGKYGPMGEDLFAQVCLDTNGVSRGEAFGTKLDGTCEADRPTAEKKNKKWKPTCDGENFPAYHPLMKPEDYMACLDATTKAFGY*

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