Scaffold Ga0115099_10188719

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115099_10188719

Scaffold Ga0115099_10188719

Overview

Basic Information
Taxon OID	3300009543 Open in IMG/M
Scaffold ID	Ga0115099_10188719 Open in IMG/M
Source Dataset Name	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3171
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	36.6882	Long. (^o)	-122.386	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017488	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115099_101887193	F017488	AGGAG	MAFITDGGGNVISFAEYTDVLQKDQRLLEANEIEVPAESGFADKTEFIEDMLEKSTNRILLKIKASTWWQGYNNYVGNSITNLNNIPNVNANLIDPGNSLGRQQQFTDMCVYYCLAQYLLPLIADFGNEESPTFAKINYYDAKFTDIYNELISIADWYDYDNSGTVDADEKAVTYFQTRRTRRRASVVKIR*

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