NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115099_10315980

Scaffold Ga0115099_10315980


Overview

Basic Information
Taxon OID3300009543 Open in IMG/M
Scaffold IDGa0115099_10315980 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1895
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.6882Long. (o)-122.386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F013232Metagenome / Metatranscriptome273Y
F016004Metagenome / Metatranscriptome250Y
F070147Metagenome / Metatranscriptome123Y
F097387Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0115099_103159801F097387N/AMKQIVLFLIIMVLMGFTISTNQKENSWEVKYHEVKKERDYYKKTSEQLLKNWKDCEEKLV
Ga0115099_103159805F006200N/AMSKTQDWLEELVKKYSIPTNDKTEKRGILNETQLKNLKNGKS*
Ga0115099_103159806F016004GGTGGMNEELLKILETLKEDFEMLQDGRWDLNYSDGSEIQASLDNVDKAINILKNE*
Ga0115099_103159807F070147N/AMKDSMVLILKGVMLDFKRRCEQNTDEGSRDTYGKWHGQIKEMIDRIENGGVK*
Ga0115099_103159808F013232N/ADREIMNAKWGLPMWWKPGIAFLREDWINHRDLKHFSNKECTDTKCTCENPKLVNLWEHDSCVRGRIDTDVCVKCNEVQSFSIIR*
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