NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116136_1000647

Scaffold Ga0116136_1000647


Overview

Basic Information
Taxon OID3300009547 Open in IMG/M
Scaffold IDGa0116136_1000647 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19481
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004817Metagenome422Y
F011572Metagenome / Metatranscriptome289Y
F014351Metagenome / Metatranscriptome263Y
F098482Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0116136_100064710F011572GGAGGMDTNRMFTSLFGNWLTAADKAAAATINYTKSTVLPRVSDLTQKATLATGKTLVKVGTKLTDCCTTK*
Ga0116136_100064713F098482N/AVDSVYLGGFEGEFISLRNPNASHRESGKLRGRRLQRFAGIDRGAVMFVHLGFAASPEGTPGMAKNFNGADFDDSVLALLDPEIVKHWKTLPEYPWVVATPTEVKVIDDGDALFDRHPKIQEYDDYYVTCMLYDAKRGQTGIGYVVNAITWFNLLWLNRESIVAELRRMPPSSQVAAAIRWMEEELPRSRMPMVASRLEEIIDAIKLNGSSINWASGVITEFRNTCPVAPKFWWQGGYQGQGRIPRDRLENGNAPIPVTTAMDVAREDWIELFHKARSFADKESWKRCWRVPPEIRSFPTRLEAAPAARDFWLFYNRTREAKKAEFLKAGKDHRGRKVTSEQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGMTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRRYVPLTWESERVRADYGDLNLDIIVEDTLVRIAGSTPNPANWIGIVDLPDGQYRLEHGLVVTKDTSEGPPQGPAVALLAANGFEQRLRDERLKQEDRQTIEAELKAFRAQVCNGVTIKPATYRNPQSREDEPGAEVFLEGTSEPFGWISREHLPLVRSELTGVLVSGGPYTLKVLCPLVGNDQPVAPPRPTVVMDVPIKDVPIPAGQHPLPQTRHVLSLDVVNGWQYKINHGTATQGELDRWKAKAGSAAIVRRTTFVRNGLSEPAVAVYLDGQEEQFAWIAKAYIPVVTQELHGHLASNSAYTLAFICEA*
Ga0116136_100064715F004817AGGAMPKTIAVVKLPEILGNGSSHLVKLAGKIDSFSLLLRETPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFSTDCASAQLEPGDLGQAPPPKRGRLCEKCCFFAGIPEEQSFEMALSPAPQDLVLVV*
Ga0116136_10006475F014351AGGAGMDEAIHLIREAIEERGGLLEMEKKPDFRWVGVARLPAGKLMLSTHKTGKQAAPGDAKSVIEASADLSIEGRLIARILFHSTKTEVELPGGTHKPFGHAGIARAFEAL*
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Institute for Fundamental Biomedical Research
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