NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10008668

Scaffold Ga0115013_10008668


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10008668 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5338
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F038672Metagenome165N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N
F073424Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0115013_1000866811F043411GGAGMKKFKNEMLKRRLTYNGKRVYIKSLDSDKAIVSHTKEGNYKQFKVNIKDLAEFK*
Ga0115013_1000866812F073424GAGMKLTPKEIKEQKALFGSKAVNYFVRFMEARRKWRRLPDCFIKQVIENSEKL*
Ga0115013_100086682F038672N/AMNELDIILRKNRLDVMIIKASAEVEKTNNKVKKEGLEVLVDILDLIHDLQHEIRENYKEIAKLKYENAVAYKENAIIKTEFSTYKHNLKQAELKSHKNE*
Ga0115013_100086686F030436N/AMNSTLKKIAEIIKDYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHQDFEKVIHDKVKEGFSVARATNEANVEVPEMYELRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY*
Ga0115013_100086687F056150N/AMDRKLIKKIENFIFWIGREYNVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDQVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
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