Basic Information | |
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Taxon OID | 3300009550 Open in IMG/M |
Scaffold ID | Ga0115013_10016134 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3949 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -17.283 | Long. (o) | 2.9768 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010357 | Metagenome / Metatranscriptome | 305 | N |
F015604 | Metagenome / Metatranscriptome | 253 | Y |
F081227 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115013_100161343 | F010357 | GGTGG | MYIDVKYSFRPNPKCRAEVVRYVETMYHFKEVKSKCGQTDVNGGRVLCDACCELADNIERSKYGY* |
Ga0115013_100161344 | F015604 | GAGG | MNNKILQQKINRRKSLIADLPFDSEGVTFDNPSITVEQGMARATRLALKGAENLNLYRLRGGK* |
Ga0115013_100161346 | F081227 | GAGG | MSSLVLQELFENKIQEASEMSNEELAKELKGSVSNSNGMMSRDTMIDIVAMKLSNAELRDEL* |
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