Basic Information | |
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Taxon OID | 3300009550 Open in IMG/M |
Scaffold ID | Ga0115013_10030362 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2914 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -17.283 | Long. (o) | 2.9768 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F026438 | Metagenome | 198 | N |
F046315 | Metagenome | 151 | Y |
F059875 | Metagenome | 133 | Y |
F073760 | Metagenome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115013_100303621 | F073760 | N/A | MGFIVDNEITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNN |
Ga0115013_100303622 | F059875 | N/A | MKVLVLIFGVITNDGQIDLVKVPNIELKNINSCEKAIEISRKWVDNPDFDNNPLPHGFYTYKNRVIMLQYCTENGVYSG* |
Ga0115013_100303623 | F046315 | GAG | LNKKLLEYSIKSGYNSSFIKEYMKRNNLLPKEYSFRKASLDLILKRYNKKIIDFVRDTYAPKEQKNKLAQISKILNPKKDAPHYFTVNDLAYDLSTWVNNFNTSNVSISPQFFMGENVQIDCIGELFGNGQIGLHKAKDFHKINIHPKYVSFKAIECQTEHKRGLMMLFEPTKIIDRNANNRTAICQDKKTKVIWFGFLDPQSNGKYNILDKSQSTGKTIGKLAENIELSWSAEVKAAYYPNIYNI* |
Ga0115013_100303624 | F026438 | N/A | MANHINVIGDSYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWKDEIEQVLWTPPVKTYWLMYIDLVSKDLLGDLKNKFGNATLTKTKGWTYTNVKCPDRPFYSDVQQVALYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYD* |
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