Scaffold Ga0115013_10937359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115013_10937359

Scaffold Ga0115013_10937359

Overview

Basic Information
Taxon OID	3300009550 Open in IMG/M
Scaffold ID	Ga0115013_10937359 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	610
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051973	Metagenome	143	Y
F066696	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_109373591	F051973	GGAG	MRIGIDCDGVLRDLITCITDTVKETHPQHADKILEPTSWDWD
Ga0115013_109373592	F066696	AGGAG	MDEREIIYERVNNYTKYKLVEMLVEKHKGKFKNLNQIEELADEILQVLSIAGLKHYNDLKGEFNADRD*

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