NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105238_10133391

Scaffold Ga0105238_10133391


Overview

Basic Information
Taxon OID3300009551 Open in IMG/M
Scaffold IDGa0105238_10133391 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2462
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri → Xanthomonas citri pv. mangiferaeindicae → Xanthomonas citri pv. mangiferaeindicae LMG 941(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014872Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0105238_101333913F014872N/AVAISGLKPQSRQFTIQLTMGFRVIHGQFFFTMLVATFLVASAAAPQPTATIDKPKRRTVTGGFCRILSNNTFSGNFGPNSSLPTLALTIGPGSTMADALHANKANFTGPGMYKNEIIAVCLGKTALEDSYMGLGTVVINADKHSGTFSLNDKSAAGHFDCGAPPAA*
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