Scaffold Ga0130029_1002330

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130029_1002330

Scaffold Ga0130029_1002330

Overview

Basic Information
Taxon OID	3300009559 Open in IMG/M
Scaffold ID	Ga0130029_1002330 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 3m; RNA IDBA-UD
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1491
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location Name	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000965	Metatranscriptome	819	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130029_10023301	F000965	GAGG	LDAAIAKLSSKIDLAAAKSAGLKEDVKELQAELAKIARQQAEMDKIRADEKAAFDTAKSELELGISGVQKALTVLKDYYGASFVQNAKAENFMQQPAMPEKHAKASGAGGSIIDILEVVLSDFAKNLATEETQEADAASSYEKTTQENKIATTMKSQDVKYKTQEYKSLDKSISELSGDKDTTSTELSAVLEYYAKIKERCIAKPETYEERKARRTAEIEGLKQALSILEGETVFMQHGHRFLRKSQQLAM*

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