Scaffold Ga0130025_1078453

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130025_1078453

Scaffold Ga0130025_1078453

Overview

Basic Information
Taxon OID	3300009566 Open in IMG/M
Scaffold ID	Ga0130025_1078453 Open in IMG/M
Source Dataset Name	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Colorado
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57054
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (69.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids → Methanogenic O-Xylene Degrading Microbial Communities From Aquifer Solids In Pensacola, Florida - Enrichment Culture X8-Ab

Source Dataset Sampling Location
Location Name	Pensacola, Florida
Coordinates	Lat. (^o)	30.703611	Long. (^o)	-87.369167	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016758	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130025_107845330	F016758	N/A	MKGGFEMNVKGIIYLTGKSTIIKVFGQEPWDAFMVKLAAKDKFFSNVIMSVTPVPQEKFILFLDELVREFFNNDMMQYVTFGKVAAQYSLSPDGMYKSYLLTKDTKQFVENVMPKFWSTYFDEGSVVTRLENNVAHLKITGLKLKHNYFEYLIMGFFQKSLKMFGKKNVPKRIRSMASGDADVYFQFELKDS*

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