NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115601_1034038

Scaffold Ga0115601_1034038


Overview

Basic Information
Taxon OID3300009582 Open in IMG/M
Scaffold IDGa0115601_1034038 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.2239Long. (o)-82.3039Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035541Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0115601_10340381F035541N/ADEVPWGCGYLNEIKFDPGAQANLHSRATITRRSHVKRLALMISLATVAGLLAIPSAYAALDYPGNIPTTDLNLIPITDTLKAGTMEWDLQARYNQDSFNRGRRVSTRLFCALFDNFEFGMAWDISRPAGPVMFAAKYKVLDEYSDFPVSLAVGAEGVTGNWQRTERDPTYYAVVGVHDVHIGGWWDWYVGVNHNPTGYDNEDNSLFGGFKYWINKEVQFNADYYGYSDNEENIISAGLNYDWINHIGFQGWVERDSVTEDNVFVLQLAVRGDMRKLTDEVSDPE*
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