Scaffold Ga0115598_1030619

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115598_1030619

Scaffold Ga0115598_1030619

Overview

Basic Information
Taxon OID	3300009583 Open in IMG/M
Scaffold ID	Ga0115598_1030619 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_B (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4464
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location Name	Old Woman Creek National Estuarine Research Reserve, Ohio, USA
Coordinates	Lat. (^o)	41.224	Long. (^o)	-82.304	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018726	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115598_10306192	F018726	AGGAG	MLPDPVSIVAAAPTPALVFAIVKSDGYGSERVDTGGNGYTVVTNHQKTKAGGSRHYVQMTKVVNAVDPYSGLTKKQVASVSITISRPSFGFTDADMVALAKALTDYRDDAEVTTAKLLQFQA*

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